Basic information about the data release:
Total sample size: 96,499
Total number of variants analyzed: 16,152,119 variants
Number of disease endpoints (phenotypes) available: 1,122 endpoints
Data released to the partners: Q4 2018 (Nov 27)
Public data release: Jan 14 2020
Thorough documentation is available at: www.finngen.fi/en/r2_documents
Please note that the allele frequency column provides the human reference genome alternative allele (not minor allele) frequency. All effect sizes and allele frequencies are reported in terms of alternate allele.
How to access the summary statistics:
- Fill this online form to gain access to Finngen GWAS summary statistics.
- Instructions on how to download summary statistics are sent to you by e-mail.
- Download the data
Please remember to acknowledge the FinnGen study when using these results in publications.
You can use the following text:
“We want to acknowledge the participants and investigators of the FinnGen study”
Browsing the results:
The web browser r2.finngen.fi contains all FinnGen GWAS results from release 2 and provides you with three options:
Search for the GWAS result of a variant, phenotype or gene.
Explore the loss-of-function burden (LoF) for gene-phenotypes combinations.
Find a particular phenotype/endpoint.